Heat oven to 375°F; butter a standard 12-cup muffin pan. Whisk flour, baking powder, baking soda, and salt in a large bowl.
Separately whisk eggs and sugar together, then yogurt, oil, milk, and vanilla. Fold into dry ingredients just until a few flour streaks remain.
Gently fold in blueberries; divide among twelve wells. Bake 22 to 25 minutes until tops spring back and tester away from berries shows no wet batter.
Rest in pan 5 minutes; transfer to rack and cool completely. Wrap individually; bag and freeze up to 2 months.
Thaw wrapped muffin at room temperature 45 to 60 minutes. To warm, unwrap and microwave on microwave-safe plate 15 to 25 seconds; split and rest briefly before eating.